PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN42077.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 101aa    MW: 11936 Da    PI: 7.505
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN42077.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind85.19.8e-271169260
                  HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
  HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                  Fl+k+y+++ed+ ++e+isw e+gn+fvv+++ +fak++LpkyFkh+nf+SFvRQLn+Y
    KHN42077.1 11 FLTKTYQLVEDPGTDEVISWGESGNTFVVWKHADFAKDLLPKYFKHNNFSSFVRQLNTY 69
                  9*********************************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.6E-28369IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.9E-27794IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.11E-24878IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.0E-161134IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.8E-221169IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-164961IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-166274IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MLQQRSVPAP FLTKTYQLVE DPGTDEVISW GESGNTFVVW KHADFAKDLL PKYFKHNNFS  60
SFVRQLNTYV CFICCPFLIL LLSYLHDLVD FHRFMLFILL R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-211691178Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN8963044e-95JN896304.1 Glycine max heat shock transcription factor HSFB1 mRNA, complete cds.
GenBankZ469534e-95Z46953.1 G.max mRNA for heat shock transcription factor 34.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003537320.18e-45PREDICTED: heat shock factor protein HSF24-like
SwissprotQ6Z9C81e-36HFB2B_ORYSJ; Heat stress transcription factor B-2b
SwissprotQ652B02e-36HFB2C_ORYSJ; Heat stress transcription factor B-2c
TrEMBLA0A0B2SCT75e-71A0A0B2SCT7_GLYSO; Heat stress transcription factor B-2c
STRINGGLYMA11G06010.12e-44(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.14e-37HSF family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]